Palaeobotany Lab

Department of Earth and Planetary Sciences
Faculty of Science, Hokkaido University

Publications

¶Corresponding author; *Co-first Authors

  1. Nakata MT, Takahara M, Yamada T, Demura T (2024) Simultaneous analysis of shape and internal structure of a curved Hibiscus cannabinus pulvinus: X-ray microtomography and semi-automated quantification. Journal of Plant Research 137: 79–94. link
  2. Ueshima T, Ishikawa N, Nakakita K, Kofuji R, Tsutsumi C, Nanami S, Yamada T (2023) Natural hybrids between Osmunda japonica and Plenasium banksiifolium (Osmundaceae) and their implications for reproductive barrier. Acta Phytotaxonomica et Geobotanica 74: 157–170. link
  3. Nishino M, Terada K, Uemura K, Ito Y, Yamada T (2023) An exceptionally well-preserved monodominant fossil forest of Wataria from the lower Miocene of Japan. Scientific Reports 13: 10172. link
  4. Ito Y, Fujinami R, Imaichi R, Yamada T (2022) Shared body plans of lycophytes inferred from root formation of Lycopodium clavatum. Frontiers in Ecology and Evolution 10. doi: 10.3389/fevo.2022.930167. link
  5. Nishino M, Ito Y, Yamada T (2022) Revision of Salvinia pseudoformosa type specimen ages. Paleontological Research 26: 359–368. link
  6. Nishida H, Stockey RA, Takebe Y, Legrand J, Yamada T (2022) Mikasapteris rothwellii gen. et sp. nov., a permineralized fertile pinnule of a probable stem polypod from the Late Cretaceous of Hokkaido, Japan. International Journal of Plant Sciences 183: 576–586. link
  7. Legrand J, Yamada T, Nishida, H (2022) Yezopollis mikasaensis gen. et sp. nov., a new Normapolles-type angiosperm pollen from the Upper Cretaceous of Hokkaido, Japan. Cretaceous Research 136: 105216. link
  8. Yamada T, Nishino M (2022) Pterophyllum pachyrachis from the Upper Jurassic to Lower Cretaceous Tetori Group, Fukui Prefecture, central Japan. Paleontological Research 26: 124–130. link
  9. McGairy A, Komatsu T, Williams M, Harvey THP, Miller CG, Nguyen PD, Legrand J, Yamada T, Siveter DJ, Bush H, Stocker CP (2021) Ostracods had colonized estuaries by the late Silurian. Biology Letters 17: 20210403. link
  10. *Teduka S, *, ¶Yamada T (2021) Age and paleoclimatic implication of middle to upper Miocene plant-bearing strata in the southern Kanazawa area, Ishikawa Prefecture, central Japan, based on refined Neogene palynostratigraphy in the Hokuriku district. Island Arc30: e12428. link
  11. Legrand J, Yamada T, Komatsu T, Williams M, Harvey T, De Backer T, Vandenbroucke TRA, Nguyen PD, Doan HD, Nguyen HB (2021) Implications of an early land plant spore assemblage for the late Silurian age of the Si Ka Formation, northern Vietnam. Annales de Paléontologie 107: 102486. link
  12. Legrand J, Yamada T, Terada K, Nishida H (2021) Palynofloras from the Itsuki and Kuwajima formations of the Tetori Group and their correlation with paleofloristic provinces of eastern Asia. Paleontological Research 25: 177-190. link
  13. Fujinami R, Nakajima A, Imaichi R, Yamada T (2021) Lycopodium root meristem dynamics support homology between shoots and roots in lycophytes. New Phytologist 229: 460–468. link
  14. Fujinami R, Yamada T, Imaichi R (2020) Root apical meristem diversity and the origin of roots: insights from extant lycophytes. Journal of Plant Research 133: 291–296. link
  15. Yamada T, Yamada TF, Terada K, Ohsawa TA, Yabe A, Legrand J, Uemura K, Leppe M, Hinojosa LF, López-Sepúlveda P, Nishida H (2019) Sueria laxinervis, a new fossil species of Cycadales from the Upper Cretaceous Quiriquina Formation in Cocholgüe, Bíobío Region, Chile. Phytotaxa 402: 126–130. link
  16. Yamada T, Sasaki Y, Sakata K, Gasser CS (2019) Possible roles of BELL1 and Class III homeodomain-leucine zipper genes during integument evolution. International Journal of Plant Sciences 180: 623–631. link
  17. Nishino M, Yamada T (2019) Limnobiophyllum expansum (Lemnoideae, Araceae) from the early Miocene Hiramaki Formation in the Kani Basin, Gifu Prefecture, Central Japan. Paleontological Research 23: 186–191. link
  18. Hashimoto K, Miyashima S, Sato-Nara K, Yamada T, Nakajima K (2018) Functionally diversified members of the MIR165/6 gene family regulate ovule morphogenesis in Arabidopsis thaliana. Plant and Cell Physiology 59: 1017–1026. link
  19. Yamada M, Yamada T (2018) Relicts of the Mid-Miocene Climatic Optimum may contribute to the floristic diversity of Japan: A case study of Pinus mikii (Pinaceae) and its extant relatives. Journal of Plant Research 131: 239–244. link
  20. Yamada T (2018) Plant fossils from the Arimine Formation (Oxfordian, Jurassic) of the Tetori Group in Arimine, Toyama Prefecture, Central Japan. Paleontological Research 22: 203–209. link
  21. Yamada T, Legrand J, Nishida H (2018) Late Early Cretaceous (Albian) Sasayama Flora from the Sasayama Group in Hyogo Prefecture, Japan. Paleontological Research 22: 112–128. link
  22. *, ¶Fujinami R, *Yamada T, Nakajima A, Takagi S, Idogawa A, Kawakami E, Tsutsumi M, Imaichi R (2017) Root apical meristem diversity in extant lycophytes and implications for root origins. New Phytologist 215: 1210–1220. link
  23. Yamada M, Yamada T (2017) Ovuliferous scale anatomies of Pinus species and their value for classification above the species level. Botanical Journal of the Linnean Society 183: 633–643. link
  24. Ohsawa TA, Yabe A, Yamada T, Uemura K, Terada K, Leppe M, Hinojosa LF, Nishida H (2016) Araucarian leaves and cone scales from the Loreto Formation of Río de Las Minas, Magellan Region, Chile. Botany 94: 805–815. link
  25. Yamada T, Sasaki Y, Hashimoto K, Nakajima K, Gasser CS (2016) CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development 143: 422–426. link
  26. Yamada T, Yamada M, Tsukagoshi M (2015) Taxonomic revision of Pinus fujiii (Yasui) Miki (Pinaceae) and its implication for the phytogeography of the Section Trifoliae in East Asia. PLoS ONE 10: e0143512. doi:10.1371/journal. pone.0143512. link
  27. Yamada M, Yamada T (2014) Pinus fujiii (Yasui) Miki from the Middle Miocene Saikawa Formation in Kanazawa, Ishikawa Prefecture, Japan. Journal of Phytogeography and Taxonomy 62: 29–31. link
  28. Sato T, Yamada T (2014) A new Oxfordian (Late Jurassic) ammonite assemblage from the Arimine Formation (Tetori Group) in the Arimine area, southeastern Toyama Prefecture, northern Central Japan. Bulletin of the National Museum of Nature and Science Series C40: 21–55. link
  29. Yamada T, Yamada M, Tsukagoshi M (2014) Fossil records of subsection Pinus (genus Pinus, Pinaceae) from the Cenozoic in Japan. Journal of Plant Research 127: 193–208. link
  30. Legrand J, Yamada T, Nishida H (2014) Palynofloras from the upper Barremian-Aptian Nishihiro Formation (Outer Zone of SW Japan) and the appearance of angiosperms in Japan. Journal of Plant Research 127: 221–232. link
  31. Sekine D, Ohnishi T, Furuumi H, Ono A, Yamada T, Kurata N, Kinoshita T (2013) Dissection of two major components of the post-zygotic hybridization barrier in rice endosperm. The Plant Journal 76: 792–799. link
  32. Katayama N, Kato M, Yamada T (2013) Origin and development of the cryptic shoot meristem in Zeylanidium lichenoides. American Journal of Botany 100: 635–646. link
  33. Tsuchimoto J, Yamada T, Yamaguchi M (2011) Unusual coelom formation in the direct-type developing sand dollar Peronella japonica. Developmental Dynamics 240: 2432–2439. link
  34. Katayama N, Kato M, Nishiuchi T, Yamada T (2011) Comparative anatomy of embryogenesis in three species of Podostemaceae and evolution of the loss of embryonic shoot and root meristems. Evolution and Development 13: 333–342. link
  35. *, ¶Yamada T, *Yokota S, Hirayama Y, Imaichi R, Kato M, Gasser CS (2011) Ancestral expression patterns and evolutionary diversification of YABBY genes in angiosperms. The Plant Journal 67: 26–36. link
  36. Legrand J, Pons D, Nishida H, Yamada T (2011) Barremian palynofloras from the Ashikajima and Kimigahama formations (Choshi Group, Outer Zone of south-west Japan). Geodiversitas 33: 87–135. link
  37. Yamada T (2009) Structurally preserved Zamites bayeri Kvaček from the Coniacian Kashima Formation (Yezo Group) of Hokkaido, Japan. Cretaceous Research 30: 1301–1306. link
  38. Yamada T, Legrand J, Nishida H (2009) Structurally preserved Nilssoniopteris from the Arida Formation (Barremian, Lower Cretaceous) of southwest Japan. Review of Palaeobotany and Palynology 156: 410–417. link
  39. Yamada T, Nishida H, Umebayashi M, Uemura K, Kato M (2008) Oldest record of Trimeniaceae from the Early Cretaceous of northern Japan. BMC Evolutionary Biology 8: 135. link
  40. Yamada T, Kato M (2008) Stopesia alveolata, a fossil seed of Trimeniaceae from the Lower Cretaceous (Albian) of Hokkaido, northern Japan. Acta Phytotaxonomica et Geobotanica 59: 228–230. link
  41. Yamada T, Hirayama Y, Imaichi R, Kato M (2008) AINTEGUMENTA homologue expression in Gnetum (gymnosperms) and implications for the evolution of ovulate axes in seed plants. Evolution and Development 10: 280–287. link
  42. Narita A, Yamada T, Matsumoto M (2008) Platanoid leaves from Cenomanian to Turonian Mikasa Formation, northern Japan and their mode of occurrence. Paleontological Research 12: 81–88. link
  43. Yamada T, Uemura K (2008) The plant fossils from the Kaizara Formation (Callovian, Jurassic) of the Tetori Group in the Izumi district, Fukui Prefecture, Central Japan. Paleontological Research 12: 1–17. link
  44. *Hirayama Y, *, ¶Yamada T, Oya Y, Ito M, Kato M, Imaichi R (2007) Expression patterns of class I KNOX and YABBY genes in Ruscus aculeatus (Asparagaceae) with implications for phylloclade homology. Development Genes and Evolution 217: 363–372. link
  45. Sato T, Yamada T (2005) A Lower Tithonian (Upper Jurassic) ammonite Prarapallasiceras newly discovered from the Itoshiro Subgroup (Tetori Group) in Izumi Village, Fukui Prefecture, central Japan. Proceedings of the Japan Academy, Series B 81: 267–272. link
  46. Yamada T, Ohno T (2005) Revision of the stratigraphy of the Toyora and Toyonishi Groups in the Ouchi-Kikugawa area, Yamaguchi Prefecture, West Japan. Journal of the Geological Society of Japan 111: 389–403. link
  47. Nakazawa A, Yamada T, Nozaki H (2004) Taxonomic study of Asterococcus (Chlorophyceae) based on comparative morphology and rbcL gene sequences. Phycologia 43: 711–721. link
  48. Yamada T, Ito M, Kato M (2004) YABBY2-homologue expression in lateral organs of Amborella trichopoda (Amborellaceae). International Journal of Plant Science 165: 917–924. link
  49. Okuda M, Nishida H, Uemura K, Yabe A, Yamada T, Rancusi MH (2004) Palynological investigation and implications on the relationship between modern surface pollen and vegetation/climate (especially precipition) in Riesco Island (Isla Riesco), subantarctic Patagonia, Chile. Natural History Research 8: 1–11. link
  50. Yamada T, Imaichi R, Prakash N, Kato M (2003) Developmental morphology of ovules and seeds of Austrobaileyales. Australian Journal of Botany 51: 555–564. link
  51. Yamada T, Ito M, Kato M (2003) Expression pattern of INNER NO OUTER homologue in Nymphaea (Water lily family, Nymphaeaceae). Development Genes and Evolution 213: 510–513. link
  52. Yamada T, Imaichi R, Kato M (2003) The outer integument and funicular outgrowth in the ovule of Magnolia grandiflora(Magnoliaceae). Journal of Plant Research 116: 189–198. link
  53. Yamada T, Kato M (2002) Regnellites nagashimae gen. et sp. nov., the oldest macrofossil of Marsileaceae, from the Upper Jurassic to Lower Cretaceous of western Japan. International Journal of Plant Science 163: 715–723. link
  54. Yamada T, Tobe H, Imaichi R, Kato M (2001) Developmental morphology of the ovules of Amborella trichopoda (Amborellaceae) and Chloranthus serratus (Chloranthaceae). Botanical Journal of the Linnaean Society 137: 277–290. link
  55. Yamada T, Imaichi R, Kato M (2001) Developmental morphology of the ovules and seeds of Nymphaeales. American Journal Botany 88: 963–974. link